1.5 - Viruses (HL only)

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Basic Viral Structure

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0:00
Teacher
Teacher

Today, we're discussing the basic structure of viruses. First off, viruses contain genetic material, either DNA or RNA. Can anyone tell me the differences between these two types?

Student 1
Student 1

I think DNA can be double-stranded while RNA is often single-stranded?

Teacher
Teacher

Exactly! DNA viruses can be either single-stranded or double-stranded, but RNA viruses can be positive-sense, negative-sense, or double-stranded. Remember: 'dsDNA' for double-stranded DNA and 'ssRNA' for single-stranded RNA! Now, what about the protective protein coat around the genetic material?

Student 2
Student 2

That's called the capsid, right? It can have different shapes like helical or icosahedral.

Teacher
Teacher

Great point! The capsid is indeed made up of protein subunits called capsomeres. A helpful mnemonic to remember it is 'C-A-P-S' for Capsid, Assembly Protein Subunits. Lastly, some viruses have an envelope. Why do you think this matters?

Student 3
Student 3

I guess envelopes can help viruses enter host cells. They use glycoproteins for recognition.

Teacher
Teacher

Exactly! Enveloped viruses are more fragile, while non-enveloped ones are tougher. To summarize, viruses consist of genetic material, a capsid, and sometimes an envelope.

Classification of Viruses

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Teacher
Teacher

Let's now move on to how we classify viruses. Can anyone name one way we might differentiate them?

Student 4
Student 4

By their type of nucleic acid, like DNA or RNA?

Teacher
Teacher

Correct! We also classify them by capsid symmetry, presence of an envelope, genome segmentation, and their replication strategy. Whatโ€™s special about the replication strategy?

Student 1
Student 1

That includes the Baltimore Classification!

Teacher
Teacher

Right again! Each virus falls into categories that help us understand how they replicate and interact with hosts. Keep in mind the Hydrocarbon Exponential: H for Helical, E for envelope, S for Symmetry. This can help you remember key classification points. Well done!

Viral Replication Cycles

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Teacher
Teacher

Next, weโ€™ll discuss viral replication cycles. Can someone explain what happens first?

Student 2
Student 2

First, the virus attaches to the host cell.

Teacher
Teacher

Correct! This is crucial as viruses need specific receptors to latch onto. Following attachment, what usually happens next?

Student 3
Student 3

The virus enters the cell, right?

Teacher
Teacher

Yes, precisely! After that, the virus undergoes uncoating. Who can explain what uncoating is?

Student 4
Student 4

It's when the viral genome is released into the host cell.

Teacher
Teacher

Exactly! Then the virus replicates its genome and synthesizes proteins before assembling new viruses. To conclude this part, remember the acronym A-E-U-R: Attached, Entered, Uncoated, Replicated!

Lytic vs. Lysogenic Cycles

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Teacher
Teacher

Now, letโ€™s differentiate between the lytic and lysogenic cycles. Student_1, could you define the lytic cycle?

Student 1
Student 1

Sure! In the lytic cycle, the virus quickly replicates and causes the host cell to lyse, or break open.

Teacher
Teacher

Thatโ€™s right! And what about the lysogenic cycle?

Student 2
Student 2

In the lysogenic cycle, the viral DNA integrates into the host's DNA and can remain dormant before becoming active.

Teacher
Teacher

Excellent! This integrated DNA is called a prophage. Why might a virus choose to go lysogenic?

Student 3
Student 3

It could be a survival strategy. The virus can wait until the conditions are right to enter the lytic cycle.

Teacher
Teacher

Exactly! To keep this clear, remember 'L for Lytic leads to Lysisโ€”with quick destruction,' while 'Lysogenic is a long game.'

Viral Pathogenesis and Hostโ€“Virus Interactions

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Teacher
Teacher

Finally, letโ€™s dive into viral pathogenesis and interactions with their hosts. Student_4, how does a virus choose its host?

Student 4
Student 4

It depends on receptor compatibility and what cells the virus can infect.

Teacher
Teacher

Exactly! Aside from receptor compatibility, how does the immune system interact with viral infections?

Student 1
Student 1

The immune response has different pathways, like innate immunity which activates quickly, and adaptive immunity that remembers specific viruses.

Teacher
Teacher

You got that right! Itโ€™s complex because viruses also have evasion strategies. Can someone mention one?

Student 3
Student 3

Viruses can frequently mutate their surface proteins to evade our immune system.

Teacher
Teacher

That's correct! And to summarize this session, remember the acronym I-V-H-R: Immune response, Virus evasion, Host interactions, and Receptor compatibility as key factors.

Introduction & Overview

Read a summary of the section's main ideas. Choose from Basic, Medium, or Detailed.

Quick Overview

Viruses, at the intersection of life and non-life, exhibit diverse structures and replication mechanisms that are central to understanding their role in ecosystems and human health.

Standard

This section delves into the unique characteristics of viruses, including their structure, classification, replication cycles, and significance in evolution and ecology. As organisms that rely on host cells for replication, viruses blur the lines between living and non-living entities.

Detailed

Viruses

Viruses occupy a complex and often debated position in biology, straddling the line between living and non-living entities. Lacking cellular structures and the ability to replicate independently, they nonetheless possess genetic material and can evolve rapidly. This section explores various facets of viruses, including their basic structure, classification criteria, replication cycles, and their broader biological significance.

1. Basic Viral Structure

  • Genetic Material: Viruses may contain either DNA (single-stranded or double-stranded) or RNA (positive-sense, negative-sense, or double-stranded). Retroviruses uniquely reverse transcribe RNA into DNA.
  • Capsid: This protein coat, composed of capsomeres, can exhibit various symmetriesโ€”helical, icosahedral, or complex/ asymmetric, each impacting how the virus interacts with host cells.
  • Envelope: Some viruses possess a lipid bilayer derived from host cell membranes, complete with viral glycoproteins that help in recognizing and entering host cells. Enveloped viruses are generally more susceptible to environmental changes than non-enveloped ones.

2. Classification of Viruses

Viruses are classified based on:
- Type of Nucleic Acid
- Capsid Symmetry
- Presence of an Envelope
- Genome Segmentation
- Replication Strategy, evidenced by the Baltimore Classification.

3. Viral Replication Cycles

Common stages of viral replication include:
- Attachment: Binding to host cell receptors.
- Entry: Viruses enter host cells either by direct penetration or endocytosis.
- Uncoating: Releasing the viral genome into the host.
- Replication and Transcription: Viral components are synthesized using the host's machinery.
- Protein Translation: Viral proteins are produced and modified.
- Assembly: New viral particles are assembled.
- Release: Viruses exit the host cell via budding or lysis.

4. Lytic vs. Lysogenic Cycles

Bacteriophages can exhibit either a lytic cycle, leading directly to cell lysis, or a lysogenic cycle, where the viral genome integrates into the host DNA and can remain dormant before reactivation.

5. Viral Pathogenesis and Hostโ€“Virus Interactions

Key concepts include host range determination, immune responses, viral evasion strategies, and oncogenic (cancer-causing) potentials of certain viruses.
- Horizontal Gene Transfer (HGT): Viruses can facilitate gene transfer between unrelated species, influencing evolutionary processes.

Conclusion

Understanding viruses is critical for comprehending their ecological impacts, contributions to evolution, and roles in diseases, emphasizing their complex relationship with living systems.

Definitions & Key Concepts

Learn essential terms and foundational ideas that form the basis of the topic.

Key Concepts

  • Viruses straddle the line between living and non-living due to their reliance on host cells.

  • Classification can be based on nucleic acid type, capsid structure, and replication strategy.

  • Viral life cycles can be lytic, resulting in host cell lysis, or lysogenic, where the viral genome integrates into the host.

Examples & Real-Life Applications

See how the concepts apply in real-world scenarios to understand their practical implications.

Examples

  • HIV is a retrovirus that integrates its genetic information into the host's DNA, demonstrating lysogenic behavior.

  • Influenza virus showcases rapid mutation and reassortment of its RNA segments, leading to vaccine challenges.

Memory Aids

Use mnemonics, acronyms, or visual cues to help remember key information more easily.

๐Ÿง  Other Memory Gems

  • A-E-U-R for the viral replication cycle: Attached, Entered, Uncoated, Replicated.

๐ŸŽต Rhymes Time

  • In the viral world, so small and round, with capsids they do surround. DNA or RNA, which path to take? Cycle lytic, or lysogenic, they can make.

๐ŸŽฏ Super Acronyms

H for Helical, E for enveloped, S for Symmetry - remember your viruses with this mnemonic!

๐Ÿ“– Fascinating Stories

  • Imagine a tiny virus knocking on the door of a cell. It has a key (glycoproteins) that helps it enter. Once inside, it uncoats and takes over โ€” replicating and assembling new viral particles. Sometimes it destroys the cell; other times, it hides quietly until the right moment!

Flash Cards

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Glossary of Terms

Review the Definitions for terms.

  • Term: Capsid

    Definition:

    The protein coat surrounding the genetic material of a virus.

  • Term: Envelope

    Definition:

    A lipid bilayer derived from the host cell that surrounds some viruses.

  • Term: Lytic Cycle

    Definition:

    A viral replication cycle that results in the destruction of the host cell.

  • Term: Lysogenic Cycle

    Definition:

    A viral replication cycle where the viral genome integrates into the host's DNA and can remain dormant.

  • Term: Prophage

    Definition:

    The viral DNA that has integrated into the host cell's chromosome during the lysogenic cycle.

  • Term: Tropism

    Definition:

    The specificity of a virus to infect certain cell types or species.