Indian Institute of Technology - Madras - 1.4 | 8. Monitoring and Measurement of Microorganisms | Environmental Quality Monitoring & Analysis, - Vol 3
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Introduction to Microorganism Monitoring

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0:00
Teacher
Teacher

Today, we'll start off by discussing how we monitor microorganisms in water. Can anyone tell me why it's important to analyze microorganisms?

Student 1
Student 1

Because they can be pathogens that affect water quality and human health.

Teacher
Teacher

Exactly! The Central Pollution Control Board sets a standard of 5 microorganisms per 100 ml of water. But how do we count such tiny organisms?

Student 2
Student 2

We might need a microscope or some sort of filtering technique, right?

Teacher
Teacher

Correct! We use filters to collect microorganisms from the water sample. Can you remember what size those bacteria are?

Student 3
Student 3

They're around 1 to 10 microns.

Teacher
Teacher

Right! It's challenging to visualize that size, and that’s why we use specialized techniques.

Teacher
Teacher

Let’s summarize — we filter water to capture microorganisms for counting, but we need some identification method, too!

Culturing Bacteria

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Teacher
Teacher

Moving on, let's discuss how we culture bacteria. Who can explain how this is done?

Student 4
Student 4

We take a sample, put it on nutrient agar to let the bacteria grow.

Teacher
Teacher

Right, and what happens after we culture the bacteria for about 24 hours?

Student 1
Student 1

They form visible colonies we can count!

Teacher
Teacher

Absolutely! These units are called CFUs, or colony-forming units. Why do we dilute samples with high bacterial concentrations?

Student 2
Student 2

To prevent overlapping colonies so we can accurately count them.

Teacher
Teacher

Exactly! Dilution is key. So remember our acronym 'CFU' — C for Colony, F for Forming, and U for Units.

Advanced Analysis Techniques

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Teacher
Teacher

Let’s move to advanced techniques — does anyone know about flow cytometry?

Student 3
Student 3

Isn’t that the method used to count cells by passing them through a narrow channel?

Teacher
Teacher

Correct! It counts individual cells as they flow past a detector. What’s an advantage of this tech?

Student 4
Student 4

It can process a lot of cells quickly?

Teacher
Teacher

Exactly, but it’s not yet a standard method for all industries. Can anyone explain why?

Student 1
Student 1

Because there are representativeness issues?

Teacher
Teacher

Right again! Remember, flow cytometry is useful but not universally accepted for water analysis.

Microbial Viability

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Teacher
Teacher

Now let's talk about viability — what do we mean by viable and non-viable organisms?

Student 2
Student 2

Viable organisms are alive and can grow, while non-viable ones are dead.

Teacher
Teacher

That's right. And why is it crucial to differentiate between them in water quality?

Student 3
Student 3

Because viable pathogens can cause infections.

Teacher
Teacher

Exactly! Lastly, what does turbidity indicate about a water sample?

Student 4
Student 4

It indicates high levels of microorganisms!

Teacher
Teacher

Great summary, everyone! Remember, distinguishing viable from non-viable microorganisms is key to assessing health risks.

Conclusion and Review

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0:00
Teacher
Teacher

So, to wrap it up, what are the key methods for analyzing microorganisms in water?

Student 1
Student 1

We filter samples, culture bacteria to count colonies, and use advanced tech like flow cytometry.

Student 2
Student 2

Also, we need to determine if they are viable or non-viable for health safety.

Teacher
Teacher

Exactly! And don’t forget about turbidity as an indirect indicator of microbial presence. Any last questions?

Student 3
Student 3

What would be the implications if we don’t monitor these microorganisms?

Teacher
Teacher

Great question! Poor water quality could lead to health risks, thus monitoring is vital. Well done today everyone!

Introduction & Overview

Read a summary of the section's main ideas. Choose from Basic, Medium, or Detailed.

Quick Overview

This section discusses the methods used for monitoring and analyzing microorganisms, particularly in water, highlighting the challenges and techniques involved.

Standard

The section focuses on the analysis of microorganisms in water quality, detailing methods like culturing and microscopy for detecting pathogens, and the challenges faced in counting microbial populations. Important techniques such as flow cytometry are introduced along with the significance of understanding viable vs. non-viable organisms.

Detailed

Monitoring and Analysis of Microorganisms

In this section, Prof. Ravi Krishna from the Department of Chemical Engineering at IIT Madras discusses various standards and methods used to monitor microorganisms, predominantly in water quality analysis. The Central Pollution Control Board (CPCB) standards indicate permissible levels of microorganisms (e.g., 5 per 100 ml) which often include pathogenic bacteria. The section highlights:

  1. Counting Microorganisms: Bacteria sizes range from 1 to 10 microns, making direct counting challenging. Thus, techniques like filtering 100 ml water samples onto filter paper to locate and count small bacterial spots are necessary.
  2. Culturing Methods: The traditional method involves growing bacteria on nutrient agar. For instance, if 5 bacteria are present in a 1 ml water sample, they are incubated for 24 hours at controlled temperatures, forming visible colonies to count.
  3. Concentration Challenges: High bacterial concentrations lead to difficulties in distinguishing distinct colonies. Therefore, dilution is often required to obtain accurate colony counts through back-calculation.
  4. Advanced Techniques: Flow cytometry can be utilized for counting microbial cells by passing them through a specialized channel, though it is not yet standard in water analysis due to representativeness issues.
  5. Detection of Viability: Assessing viable and non-viable organisms is crucial. Viable organisms pose health risks, whereas non-viable cells typically do not. Turbidity in water often indicates high microorganism concentrations, though it is not a definitive measurement.

This comprehensive overview emphasizes the significance of microbial analysis in ensuring water quality and the ongoing challenges faced in accurately monitoring these pathogens.

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Audio Book

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Microorganism Standards and Methods for Analysis

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So, here if we look at the standards that people use for analysis of microorganisms, for example, CPCB standards for microorganisms will be like say 5 per 100 ml or 5 microorganisms for 100 ml. So, the microorganisms we are talking about are predominantly pathogens. Many of the pathogens are bacteria, there are a few viruses and all that but mainly bacteria and for water quality, people count the number of bacteria in it. Here we focus on water only. There are bacteria in air also, fungal spores and all but there are no standards for it yet. It is still going on; people are trying to develop it, but it will take some time for it to happen.

Detailed Explanation

In this chunk, we discuss the standards used to measure microorganisms in water. The Central Pollution Control Board (CPCB) in India has set a standard that allows only 5 microorganisms per 100 milliliters of water, indicating that this is a safe limit for drinking water. The text specifies that most microorganisms of concern are pathogens, primarily bacteria, which can cause diseases. It's important to note that, while there are measures for water, standards for bacteria found in air are still being developed.

Examples & Analogies

Think of drinking water as a clear glass of lemonade. Just like you'd want your lemonade to be refreshing and free of any unwanted fruits or items, we want our water to be free from harmful microorganisms. The standard of 5 per 100 ml is similar to saying you can have at most 5 floating pieces of fruit in your lemonade – any more than that, and it's no longer considered safe to drink.

Challenges in Counting Microorganisms

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So, how do you count say 5 per 100 ml? This bacteria size is around 1 to 10 microns, it means if I take 100 ml sample, I have to see it, it is difficult to count, so you need a microscope. So how do you do this? You take 100 ml of sample, you filter it, put it on a filter paper and observe the filter paper if somewhere in the filter paper there are 5-micron spots. Filter papers are big 2.5 centimeters in size; you have to search for 5 microns somewhere, so it is not very easy. So, this is a big challenge, counting microbial populations is a big challenge.

Detailed Explanation

Counting microorganisms in water samples can be very challenging because of their tiny size (1 to 10 microns) and the volume of the sample. The method described involves filtering 100 ml of water to collect microorganisms on a filter paper and then searching for small spots that may contain the bacteria. This is difficult because the number is small and locating them on a relatively large filter paper is comparable to finding a few tiny seeds scattered on a large table.

Examples & Analogies

Imagine trying to find a few grains of sand on a large beach. You have to sift through a huge area to find just a handful of grains. This is similar to the challenge scientists face when searching for tiny bacteria in a large water sample using filter paper.

Culturing Method for Bacteria Analysis

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One of the old standard methods is that people use what is called a culturing method. A lot of people work on these various ways of doing it, but one of the simplest methods is to take a water sample and you culture the bacteria on a nutrient medium. Typically, what you do is, you take a plate filled with some nutrients. There are some standard nutrients... So, when it becomes big you can see it. So, you have formation of a colony, one bacterial cell will multiply 2, 4, 6, 8 it multiplies in some fashion and whatever was this one single dot, you cannot see now has become a colony.

Detailed Explanation

The culturing method involves taking a small amount of water, introducing it to a nutrient-rich medium, and letting the bacteria grow. This method exploits the ability of bacteria to multiply rapidly. After incubation, the once invisible bacteria form visible colonies, which can be counted. Each colony comes from a single bacterial cell, representing how many bacteria were in the original sample. By using this method, scientists can get a count of the bacteria present even when they were too tiny to see initially.

Examples & Analogies

Think of it like planting seeds in a garden. Initially, you cannot see the seeds, but with enough time and the right conditions (soil, water, sunlight), they grow into visible plants. Similarly, the bacteria you cannot see in the water sample multiply into visible colonies after being given the right nutrients.

Dilution for High Concentration Samples

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So, what if it has 100 already? If you have 100, you have no problem because there are other methods of doing it. But if you do culturing when you have very high concentration is you already have a lot of dots and at the end of one day, you may get a big jumble, a big mass and you cannot differentiate how many originally were there. So, usually the analysis prefers that, if you have a very large number, you dilute it so that you can get distinct masses of colony forms.

Detailed Explanation

When the concentration of bacteria in a sample is extremely high, counting them becomes problematic because the colonies can merge into a mass, making it difficult to distinguish between the different colonies. To overcome this, scientists dilute the sample before culturing. For instance, if there's an estimated concentration of 100 colonies, diluting the sample helps ensure that when cultured, distinct colonies form, allowing for accurate counting.

Examples & Analogies

Imagine trying to pick out individual beads from a bowl filled with thousands of colorful beads closely packed together. It would be quite confusing! However, if you poured the beads onto a larger surface with more space, it would be much easier to pick out and count specific colors. Similarly, diluting bacterial samples helps in counting them accurately.

Microscopy and Advanced Techniques

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So, microbes are treated like particles, so you can also look at it like a particle and look at it in a microscope... So, flow cytometry is used in diagnostic analysis in blood. When you do blood analysis, you will see them laying there using flow cytometry will count the number of red blood cells, white blood cells, and all the cells which are about the same order of magnitude.

Detailed Explanation

In addition to traditional culturing methods, advanced techniques like flow cytometry can be used for counting bacteria. This technique forces a sample of liquid, containing microorganisms, through a narrow passage where they pass one by one past a detector, which counts them. This is similar to how blood cells are analyzed, offering a different approach to microbial analysis.

Examples & Analogies

Consider a busy highway during rush hour. A sensor at the beginning of the highway counts each car as it passes by, even though they are moving quickly and closely together. Flow cytometry works in a similar way, counting the individual bacteria as they flow through the pathway, providing a rapid and efficient count.

Definitions & Key Concepts

Learn essential terms and foundational ideas that form the basis of the topic.

Key Concepts

  • Monitoring Microorganisms: Understanding the need to analyze water quality by measuring microorganisms.

  • CFU: A standard unit to quantify the number of viable bacteria in a sample.

  • Viable vs. Non-viable Organisms: Differentiating between living and dead organisms for accurate assessment of health risks.

Examples & Real-Life Applications

See how the concepts apply in real-world scenarios to understand their practical implications.

Examples

  • A water sample from a local reservoir is filtered to capture bacteria for counting as per CPCB standards.

  • Bacterial cultures are grown on nutrient agar plates, displaying colonies that can be counted to determine the microbial concentration.

Memory Aids

Use mnemonics, acronyms, or visual cues to help remember key information more easily.

🎵 Rhymes Time

  • To keep the water clean and bright, check for germs day and night!

📖 Fascinating Stories

  • Every colony tells a story about water quality!

🧠 Other Memory Gems

  • Remember: 'C'ulture 'F'orms 'U'nits — CFU helps track colonies in water quality.

🎯 Super Acronyms

CPC

  • Clean Public Check. Think of CPCB's role as maintaining clean water standards.

Flash Cards

Review key concepts with flashcards.

Glossary of Terms

Review the Definitions for terms.

  • Term: CPCB

    Definition:

    Central Pollution Control Board, the authority setting standards for water quality analysis.

  • Term: CFU

    Definition:

    Colony Forming Unit, used to estimate the number of microorganisms in a sample based on colony growth.

  • Term: Turbidity

    Definition:

    The cloudiness or haziness of a fluid caused by large numbers of individual particles that are usually invisible to the naked eye.

  • Term: Viable

    Definition:

    An organism that is capable of growth and reproduction.